Package: actibase 0.2.0
John Muschelli
actibase: Baseline Functions for Actigraphy and Activity Processing and Analysis
Provides baseline functions for actigraphy and activity data. This package is intended to be extended by downstream overlays such as 'actiread', 'actimetrics', and 'stepcount'.
Authors:
actibase_0.2.0.tar.gz
actibase_0.2.0.zip(r-4.7)actibase_0.2.0.zip(r-4.6)actibase_0.2.0.zip(r-4.5)
actibase_0.2.0.tgz(r-4.6-any)actibase_0.2.0.tgz(r-4.5-any)
actibase_0.2.0.tar.gz(r-4.7-any)actibase_0.2.0.tar.gz(r-4.6-any)
actibase_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
actibase/json (API)
NEWS
| # Install 'actibase' in R: |
| install.packages('actibase', repos = c('https://jhuwit.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jhuwit/actibase/issues
Pkgdown/docs site:https://jhuwit.github.io
- acti_raw_data - Example Actigraphy/Activity Raw Data
- txyz - Vector of X, Y, Z, and maybe time
- xyz - Vector of X, Y, Z, and maybe time
- xyzt - Vector of X, Y, Z, and maybe time
Last updated from:2a3ea9f2f2. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 137 | ||
| source / vignettes | OK | 221 | ||
| linux-release-x86_64 | OK | 148 | ||
| macos-release-arm64 | OK | 181 | ||
| macos-oldrel-arm64 | OK | 207 | ||
| windows-devel | OK | 68 | ||
| windows-release | OK | 98 | ||
| windows-oldrel | OK | 118 | ||
| wasm-release | OK | 105 |
Exports:acti_create_dateacti_create_houracti_create_minuteacti_fill_zeroesacti_fill_zerosacti_resampleacti_resample_to_timeacti_separate_timeacti_separate_timesacti_standardise_dataacti_standardize_dataacti_tidy_axesadd_day_inclusionas_convert_safeas_date_safeas_datetime_safecreate_day_inclusionflag_all_zeroflag_contiguous_device_limitflag_device_limitflag_impossibleflag_interval_jumpflag_qcflag_qc_allflag_same_valueflag_spikeflag_spike_secondget_dynamic_rangeget_sample_rateget_transformationsis.AccDatamark_conditionprefix_transformationsset_transformationsstrip_hour_shift
Dependencies:assertthatclicpp11dplyrgenericsgluehmsjanitorlifecyclelubridatemagrittrpillarpkgconfigpurrrR6rlangsnakecasestringistringrtibbletidyrtidyselecttimechangeutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fill in Zeros | acti_fill_zeroes acti_fill_zeros |
| Example Actigraphy/Activity Raw Data | acti_raw_data |
| Resample 3-axial input signal to a specific sampling rate | acti_resample acti_resample_to_time |
| Separate Times into Date, Hour, and Minute | acti_create_date acti_create_hour acti_create_minute acti_separate_time acti_separate_times |
| Standardize the Accelerometry Data | acti_standardise_data acti_standardize_data |
| Tidy axes to a long format | acti_tidy_axes |
| Convert vectors ensuring no new NA | as_convert_safe as_datetime_safe as_date_safe |
| Create Day-Level Inclusion information | add_day_inclusion create_day_inclusion |
| Flag Quality Control Values | flag_qc flag_qc_all |
| Flag Spikes | flag_all_zero flag_contiguous_device_limit flag_device_limit flag_impossible flag_interval_jump flag_same_value flag_spike flag_spike_second |
| Get Dynamic Range | get_dynamic_range |
| Get Sample Rate | get_sample_rate |
| Get Transformations | get_transformations prefix_transformations set_transformations |
| Is the object of class `AccData` | is.AccData |
| Mark a Condition of a Specified Minimum Length | mark_condition |
| Strip Hour Shift from Character Time Vector | strip_hour_shift |
| Vector of X, Y, Z, and maybe time | txyz xyz xyzt |
