Scope | CDC code mapping | Producing letter labels | Reference
Package: actibase 0.8.0
John Muschelli
actibase: Baseline Functions for Actigraphy and Activity Processing and Analysis
Provides baseline functions for actigraphy and activity data. This package is intended to be extended by downstream overlays such as 'actiread', 'actimetrics', and 'stepcount'.
Authors:
actibase_0.8.0.tar.gz
actibase_0.8.0.zip(r-4.7-any)actibase_0.8.0.zip(r-4.6-any)actibase_0.8.0.zip(r-4.5-any)
actibase_0.8.0.tgz(r-4.6-any)actibase_0.8.0.tgz(r-4.5-any)
actibase_0.8.0.tar.gz(r-4.7-any)actibase_0.8.0.tar.gz(r-4.6-any)
actibase_0.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
actibase/json (API)
| # Install 'actibase' in R: |
| install.packages('actibase', repos = c('https://jhuwit.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jhuwit/actibase/issues
Pkgdown/docs site:https://jhuwit.github.io
Datasets:
- acti_raw_data - Example Actigraphy/Activity Raw Data
- txyz - Vector of X, Y, Z, and maybe time
- xyz - Vector of X, Y, Z, and maybe time
- xyzt - Vector of X, Y, Z, and maybe time
Last updated from:6dee37c390. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 135 | ||
| source / vignettes | OK | 202 | ||
| linux-release | OK | 129 | ||
| macos-release | OK | 101 | ||
| macos-oldrel | OK | 102 | ||
| windows-devel | OK | 87 | ||
| windows-release | OK | 83 | ||
| windows-oldrel | OK | 91 | ||
| wasm-release | OK | 90 |
Exports:acti_create_dateacti_create_houracti_create_minuteacti_day_indexacti_day_startacti_fill_zeroesacti_fill_zerosacti_flag_adjacent_device_limit_samplesacti_flag_adjacent_invalid_periodsacti_flag_all_zeroacti_flag_cdc_labelsacti_flag_contiguous_device_limitacti_flag_contiguous_device_limit_runsacti_flag_contiguous_device_limitsacti_flag_device_limitacti_flag_device_limit_windowsacti_flag_impossibleacti_flag_interval_jumpacti_flag_qcacti_flag_qc_allacti_flag_repeated_samplesacti_flag_same_valueacti_flag_spikeacti_flag_spike_secondacti_hms_to_minuteacti_minute_to_hmsacti_remove_leading_zeroesacti_remove_leading_zerosacti_repeat_time_of_dayacti_resampleacti_resample_to_timeacti_separate_timeacti_separate_timesacti_split_intervals_at_midnightacti_standardise_dataacti_standardize_dataacti_tidy_axesacti_time_of_dayacti_time_to_minuteadd_day_inclusionas_convert_safeas_date_safeas_datetime_safecreate_day_inclusionget_dynamic_rangeget_sample_rateget_transformationsis.AccDatamark_conditionprefix_transformationsset_transformationsstrip_hour_shift
Dependencies:assertthatclicpp11dplyrgenericsgluehmslifecyclelubridatemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselecttimechangeutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate a Baseline-Relative Activity-Day Index | acti_day_index |
| Find the Start of an Activity Day | acti_day_start |
| Fill in Zeros | acti_fill_zeroes acti_fill_zeros acti_remove_leading_zeroes acti_remove_leading_zeros |
| Flag periods adjacent to invalid periods | acti_flag_adjacent_invalid_periods |
| Label quality flags with CDC NHANES letters | acti_flag_cdc_labels |
| Flag contiguous device-limit runs | acti_flag_contiguous_device_limits acti_flag_contiguous_device_limit_runs |
| Flag device-limit counts within time windows | acti_flag_device_limit_windows |
| Flag Quality Control Values | acti_flag_qc acti_flag_qc_all |
| Flag repeated samples | acti_flag_repeated_samples |
| Flag Spikes | acti_flag_adjacent_device_limit_samples acti_flag_all_zero acti_flag_contiguous_device_limit acti_flag_device_limit acti_flag_impossible acti_flag_interval_jump acti_flag_same_value acti_flag_spike acti_flag_spike_second |
| Convert an HMS Time to a Minute Index | acti_hms_to_minute |
| Convert a Minute Index to an HMS Time | acti_minute_to_hms |
| Example Actigraphy/Activity Raw Data | acti_raw_data |
| Repeat a Time of Day Across a Recording | acti_repeat_time_of_day |
| Resample 3-axial input signal to a specific sampling rate | acti_resample acti_resample_to_time |
| Separate Times into Date, Hour, and Minute | acti_create_date acti_create_hour acti_create_minute acti_separate_time acti_separate_times |
| Split Intervals at Midnight | acti_split_intervals_at_midnight |
| Standardize the Accelerometry Data | acti_standardise_data acti_standardize_data |
| Tidy axes to a long format | acti_tidy_axes |
| Extract the Time of Day | acti_time_of_day |
| Convert a Time of Day to a Minute Index | acti_time_to_minute |
| Convert vectors ensuring no new NA | as_convert_safe as_datetime_safe as_date_safe |
| Create Day-Level Inclusion information | add_day_inclusion create_day_inclusion |
| Get Dynamic Range | get_dynamic_range |
| Get Sample Rate | get_sample_rate |
| Get Transformations | get_transformations prefix_transformations set_transformations |
| Is the object of class 'AccData' | is.AccData |
| Mark a Condition of a Specified Minimum Length | mark_condition |
| Strip Hour Shift from Character Time Vector | strip_hour_shift |
| Vector of X, Y, Z, and maybe time | txyz xyz xyzt |